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LARGE1 LARGE xylosyl- and glucuronyltransferase 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102042730, updated on 3-Aug-2024

Summary

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Gene symbol
LARGE1
Gene description
LARGE xylosyl- and glucuronyltransferase 1
See related
Ensembl:ENSGFOG00000008423
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See LARGE1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054334.1 (1303281..1570123, complement)

NW_005054334.1Genomic Context describing neighboring genes Neighboring gene F-box protein 7 Neighboring gene synapsin III Neighboring gene TIMP metallopeptidase inhibitor 3 Neighboring gene uncharacterized LOC115947961 Neighboring gene intestine specific homeobox Neighboring gene HMG-box containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054334 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LARGE xylosyl- and glucuronyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054334.1 Reference GeoFor_1.0

    Range
    1303281..1570123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005421801.2 → XP_005421858.1  LARGE xylosyl- and glucuronyltransferase 1

    UniProtKB/TrEMBL
    A0A6I9HJ82
    Conserved Domains (2) summary
    cd06431
    Location:138 → 417
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:473 → 742
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

  2. XM_031057702.1 → XP_030913562.1  LARGE xylosyl- and glucuronyltransferase 1

    UniProtKB/TrEMBL
    A0A6I9HJ82
    Related
    ENSGFOP00000012158.1, ENSGFOT00000012581.1
    Conserved Domains (2) summary
    cd06431
    Location:138 → 417
    GT8_LARGE_C; LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis
    pfam13896
    Location:473 → 742
    Glyco_transf_49; Glycosyl-transferase for dystroglycan

RNA

  1. XR_004081817.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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