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HEXB hexosaminidase subunit beta [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102042259, updated on 3-Aug-2024

Summary

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Gene symbol
HEXB
Gene description
hexosaminidase subunit beta
See related
Ensembl:ENSGFOG00000012399
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See HEXB in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054476.1 (426595..440123, complement)

NW_005054476.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 169 member A Neighboring gene NSA2 ribosome biogenesis factor Neighboring gene GTP dependent ribosome recycling factor mitochondrial 2 Neighboring gene ectodermal-neural cortex 1 Neighboring gene Rho guanine nucleotide exchange factor 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054476 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylhexosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ganglioside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosaminoglycan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-hexosaminidase subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054476.1 Reference GeoFor_1.0

    Range
    426595..440123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014310023.2 → XP_014165498.1  beta-hexosaminidase subunit beta

    UniProtKB/TrEMBL
    A0A6I9ZCT9
    Related
    ENSGFOP00000018311.1, ENSGFOT00000018907.1
    Conserved Domains (1) summary
    cd06562
    Location:1 → 315
    GH20_HexA_HexB-like; Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the ...
Nucleotide Protein
Heading Accession and Version

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