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SMPD2 sphingomyelin phosphodiesterase 2 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102041659, updated on 3-Aug-2024

Summary

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Gene symbol
SMPD2
Gene description
sphingomyelin phosphodiesterase 2
See related
Ensembl:ENSGFOG00000009506
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See SMPD2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054545.1 (24655..28157, complement)

NW_005054545.1Genomic Context describing neighboring genes Neighboring gene lymphoid-restricted membrane protein-like Neighboring gene uncharacterized LOC115948824 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene TEA domain transcription factor 3 Neighboring gene TUB like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054545 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054545.1 Reference GeoFor_1.0

    Range
    24655..28157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005429362.2 → XP_005429419.1  sphingomyelin phosphodiesterase 2

    UniProtKB/TrEMBL
    A0A6I9HS66
    Related
    ENSGFOP00000013893.1, ENSGFOT00000014351.1
    Conserved Domains (1) summary
    cl00490
    Location:14 → 279
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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