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RPN1 ribophorin I [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102039983, updated on 3-Aug-2024

Summary

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Gene symbol
RPN1
Gene description
ribophorin I
See related
Ensembl:ENSGFOG00000012177
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See RPN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054339.1 (5618656..5625347)

NW_005054339.1Genomic Context describing neighboring genes Neighboring gene histone H1x Neighboring gene RAB7A, member RAS oncogene family Neighboring gene uncharacterized LOC115948016 Neighboring gene GATA binding protein 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member B8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054339 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054339.1 Reference GeoFor_1.0

    Range
    5618656..5625347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005422555.2 → XP_005422612.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

    UniProtKB/TrEMBL
    A0A6I9HJ71
    Conserved Domains (1) summary
    pfam04597
    Location:26 → 385
    Ribophorin_I; Ribophorin I

  2. XM_031058176.1 → XP_030914036.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

    UniProtKB/TrEMBL
    A0A6I9HJ71
    Related
    ENSGFOP00000017972.1, ENSGFOT00000018558.1
    Conserved Domains (1) summary
    pfam04597
    Location:26 → 385
    Ribophorin_I; Ribophorin I
Nucleotide Protein
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