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RRAGD Ras related GTP binding D [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102038900, updated on 3-Aug-2024

Summary

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Gene symbol
RRAGD
Gene description
Ras related GTP binding D
See related
Ensembl:ENSGFOG00000005200
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See RRAGD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054332.1 (4439281..4452339, complement)

NW_005054332.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid receptor subunit rho-2 Neighboring gene ubiquitin conjugating enzyme E2 J1 Neighboring gene ankyrin repeat domain 6 Neighboring gene LYR motif containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054332 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to amino acid stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of TOR signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Gtr1-Gtr2 GTPase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related GTP-binding protein D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054332.1 Reference GeoFor_1.0

    Range
    4439281..4452339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005421693.2 → XP_005421750.1  ras-related GTP-binding protein D

    See identical proteins and their annotated locations for XP_005421750.1

    UniProtKB/TrEMBL
    A0A6I9HHX2
    Related
    ENSGFOP00000007386.1, ENSGFOT00000007627.1
    Conserved Domains (1) summary
    cd11385
    Location:1 → 171
    RagC_like; Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins C and D
Nucleotide Protein
Heading Accession and Version

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