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AGXT alanine--glyoxylate and serine--pyruvate aminotransferase [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102037730, updated on 18-Sep-2024

Summary

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Gene symbol
AGXT
Gene description
alanine--glyoxylate and serine--pyruvate aminotransferase
See related
Ensembl:ENSGFOG00000000240
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See AGXT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054380.1 (2461630..2465284, complement)

NW_005054380.1Genomic Context describing neighboring genes Neighboring gene sushi, nidogen and EGF like domains 1 Neighboring gene mab-21 like 4 Neighboring gene kinesin family member 1A Neighboring gene ILK associated serine/threonine phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054380 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-serine-pyruvate transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alanine-glyoxylate transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine biosynthetic process, by transamination of glyoxylate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine--pyruvate aminotransferase
Names
alanine-glyoxylate aminotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054380.1 Reference GeoFor_1.0

    Range
    2461630..2465284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005425067.3 → XP_005425124.2  serine--pyruvate aminotransferase

    UniProtKB/TrEMBL
    A0A6I9HNM7
    Related
    ENSGFOP00000000314.1, ENSGFOT00000000324.1
    Conserved Domains (1) summary
    cd06451
    Location:24 → 395
    AGAT_like; Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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