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GLB1L galactosidase beta 1 like [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102037300, updated on 3-Aug-2024

Summary

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Gene symbol
GLB1L
Gene description
galactosidase beta 1 like
See related
Ensembl:ENSGFOG00000004178
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See GLB1L in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054298.1 (14187170..14192591, complement)

NW_005054298.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 2B Neighboring gene ATP binding cassette subfamily B member 6 (LAN blood group) Neighboring gene autophagy related 9A Neighboring gene serine/threonine kinase 16 Neighboring gene tubulin alpha-5 chain-like Neighboring gene tubulin alpha-4A chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054298 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: beta-galactosidase-1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054298.1 Reference GeoFor_1.0

    Range
    14187170..14192591 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005415800.2 → XP_005415857.2  LOW QUALITY PROTEIN: beta-galactosidase-1-like protein

    UniProtKB/TrEMBL
    A0A6I9HBF6
    Related
    ENSGFOP00000005873.1, ENSGFOT00000006043.1
    Conserved Domains (2) summary
    pfam01301
    Location:55 → 371
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:533 → 622
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
Nucleotide Protein
Heading Accession and Version

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