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TMEM199 transmembrane protein 199 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102036655, updated on 3-Aug-2024

Summary

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Gene symbol
TMEM199
Gene description
transmembrane protein 199
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See TMEM199 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054387.1 (2421478..2424075)

NW_005054387.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD91 family Neighboring gene TSR1 ribosome maturation factor Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene kinesin family member 12 Neighboring gene vitronectin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054387 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 199

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054387.1 Reference GeoFor_1.0

    Range
    2421478..2424075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031060620.1 → XP_030916480.1  transmembrane protein 199

    UniProtKB/TrEMBL
    A0A8N5ESU5
    Conserved Domains (1) summary
    pfam11712
    Location:32 → 138
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase
Nucleotide Protein
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