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SLC35F3 solute carrier family 35 member F3 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102036307, updated on 3-Aug-2024

Summary

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Gene symbol
SLC35F3
Gene description
solute carrier family 35 member F3
See related
Ensembl:ENSGFOG00000011318
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See SLC35F3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054348.1 (2395539..2440083, complement)

NW_005054348.1Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 2 binding protein 2 Neighboring gene TAR (HIV-1) RNA binding protein 1 Neighboring gene potassium two pore domain channel subfamily K member 1 Neighboring gene mitogen-activated protein kinase kinase kinase 21

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054348 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in thiamine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative thiamine transporter SLC35F3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054348.1 Reference GeoFor_1.0

    Range
    2395539..2440083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005423202.3 → XP_005423259.3  putative thiamine transporter SLC35F3

    UniProtKB/TrEMBL
    A0A6I9HK05
    Related
    ENSGFOP00000016640.1, ENSGFOT00000017186.1
    Conserved Domains (1) summary
    pfam06027
    Location:125 → 298
    SLC35F; Solute carrier family 35
Nucleotide Protein
Heading Accession and Version

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