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POMGNT2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102034462, updated on 3-Aug-2024

Summary

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Gene symbol
POMGNT2
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
See related
Ensembl:ENSGFOG00000003721
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See POMGNT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054361.1 (4222522..4233361, complement)

NW_005054361.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L14 Neighboring gene golgi associated kinase 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054361 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054361.1 Reference GeoFor_1.0

    Range
    4222522..4233361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005423960.2 → XP_005424017.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    See identical proteins and their annotated locations for XP_005424017.1

    UniProtKB/TrEMBL
    A0A6I9HMF2
    Related
    ENSGFOP00000005251.1, ENSGFOT00000005397.1
    Conserved Domains (1) summary
    pfam04577
    Location:212 → 389
    DUF563; Protein of unknown function (DUF563)

  2. XM_005423958.1 → XP_005424015.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    See identical proteins and their annotated locations for XP_005424015.1

    UniProtKB/TrEMBL
    A0A6I9HMF2
    Conserved Domains (1) summary
    pfam04577
    Location:212 → 389
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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