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CHGA chromogranin A [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102033878, updated on 3-Aug-2024

Summary

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Gene symbol
CHGA
Gene description
chromogranin A
See related
Ensembl:ENSGFOG00000004690
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See CHGA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054303.1 (1048691..1062202)

NW_005054303.1Genomic Context describing neighboring genes Neighboring gene legumain Neighboring gene golgin A5 Neighboring gene inositol-tetrakisphosphate 1-kinase Neighboring gene lysosomal enzyme trafficking factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054303 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in adenylate cyclase-activating adrenergic receptor signaling pathway involved in cardiac muscle relaxation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of catecholamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of insulin secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromaffin granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromogranin-A
Names
chromogranin A (parathyroid secretory protein 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054303.1 Reference GeoFor_1.0

    Range
    1048691..1062202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005417989.3 → XP_005418046.2  chromogranin-A

    UniProtKB/TrEMBL
    A0A6I9HDD8
    Related
    ENSGFOP00000006641.1, ENSGFOT00000006848.1
    Conserved Domains (1) summary
    pfam01271
    Location:35 → 481
    Granin; Granin (chromogranin or secretogranin)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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