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CSPG4 chondroitin sulfate proteoglycan 4 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102033538, updated on 3-Aug-2024

Summary

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Gene symbol
CSPG4
Gene description
chondroitin sulfate proteoglycan 4
See related
Ensembl:ENSGFOG00000014072
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See CSPG4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054313.1 (9909821..9923593)

NW_005054313.1Genomic Context describing neighboring genes Neighboring gene high mobility group 20A Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene sorting nexin 33 Neighboring gene snurportin 1 Neighboring gene protein tyrosine phosphatase non-receptor type 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054313 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054313.1 Reference GeoFor_1.0

    Range
    9909821..9923593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031055920.1 → XP_030911780.1  LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4

    UniProtKB/TrEMBL
    A0A8N5HWY9
    Related
    ENSGFOP00000021169.1, ENSGFOT00000021848.1
    Conserved Domains (2) summary
    cd00110
    Location:183 → 342
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam16184
    Location:1439 → 1546
    Cadherin_3; Cadherin-like
Nucleotide Protein
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