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NDST1 N-deacetylase and N-sulfotransferase 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102031931, updated on 3-Aug-2024

Summary

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Gene symbol
NDST1
Gene description
N-deacetylase and N-sulfotransferase 1
See related
Ensembl:ENSGFOG00000000193
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See NDST1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054308.1 (6094306..6103528)

NW_005054308.1Genomic Context describing neighboring genes Neighboring gene CD74 molecule Neighboring gene ribosomal protein S14 Neighboring gene synaptopodin Neighboring gene myozenin 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054308 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
Names
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054308.1 Reference GeoFor_1.0

    Range
    6094306..6103528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005418734.2 → XP_005418791.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A6I9HF73
    Related
    ENSGFOP00000000233.1, ENSGFOT00000000241.1
    Conserved Domains (2) summary
    pfam00685
    Location:600 → 857
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:30 → 510
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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