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CAT catalase [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102031847, updated on 3-Aug-2024

Summary

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Gene symbol
CAT
Gene description
catalase
See related
Ensembl:ENSGFOG00000005045
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See CAT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054402.1 (152742..162625, complement)

NW_005054402.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA (8-3)-desaturase-like Neighboring gene acyl-CoA (8-3)-desaturase-like Neighboring gene ankyrin repeat and BTB domain containing 2 Neighboring gene olfactory receptor 5G3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054402 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hydrogen peroxide IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catalase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054402.1 Reference GeoFor_1.0

    Range
    152742..162625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014309117.2 → XP_014164592.2  catalase

    UniProtKB/TrEMBL
    A0A6I9ZBW7
    Related
    ENSGFOP00000007246.1, ENSGFOT00000007482.1
    Conserved Domains (1) summary
    cd08156
    Location:8 → 437
    catalase_clade_3; Clade 3 of the heme-binding enzyme catalase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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