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EPC1-AS1 EPC1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102031319, updated on 17-Sep-2024

Summary

Official Symbol
EPC1-AS1provided by HGNC
Official Full Name
EPC1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:50717
See related
Ensembl:ENSG00000229327 AllianceGenome:HGNC:50717
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See EPC1-AS1 in Genome Data Viewer
Location:
10p11.22
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (32347364..32374488)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (32376503..32403591)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (32636292..32663416)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr10:32485087-32485280 Neighboring gene Sharpr-MPRA regulatory regions 2209 and 5551 Neighboring gene peptidylprolyl isomerase A pseudogene 31 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:32536341-32536558 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32542436-32542936 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2284 Neighboring gene ribosomal protein S24 pseudogene 13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2285 Neighboring gene enhancer of polycomb homolog 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2288 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2287 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3247 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2286 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32667292-32667792 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32667793-32668293 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:32668668-32668769 Neighboring gene RNA, U6 small nuclear 1244, pseudogene Neighboring gene uncharacterized LOC101929431 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3248 Neighboring gene coiled-coil domain containing 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study of female sexual dysfunction.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104163.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391839, BX107541
    Related
    ENST00000417447.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    32347364..32374488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    32376503..32403591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)