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Trmt9b tRNA methyltransferase 9B (putative) [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102015816, updated on 10-Mar-2024

Summary

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Gene symbol
Trmt9b
Gene description
tRNA methyltransferase 9B (putative)
See related
Ensembl:ENSCLAG00000000634
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Also known as
Kiaa1456
Orthologs
human mouse all
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Genomic context

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See Trmt9b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955463.1 (4035145..4096996, complement)

NW_004955463.1Genomic Context describing neighboring genes Neighboring gene DLC1 Rho GTPase activating protein Neighboring gene uncharacterized LOC102014221 Neighboring gene uncharacterized LOC106150060 Neighboring gene LON peptidase N-terminal domain and ring finger 1 Neighboring gene PEAK1 related, kinase-activating pseudokinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955463.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable tRNA methyltransferase 9-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955463.1 Reference ChiLan1.0 Primary Assembly

    Range
    4035145..4096996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013521548.1 → XP_013377002.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  2. XM_013521544.1 → XP_013376998.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  3. XM_013521538.1 → XP_013376992.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  4. XM_013521543.1 → XP_013376997.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  5. XM_013521550.1 → XP_013377004.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  6. XM_013521541.1 → XP_013376995.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  7. XM_013521546.1 → XP_013377000.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  8. XM_013521540.1 → XP_013376994.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  9. XM_013521542.1 → XP_013376996.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  10. XM_013521545.1 → XP_013376999.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  11. XM_013521551.1 → XP_013377005.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  12. XM_013521539.1 → XP_013376993.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  13. XM_013521549.1 → XP_013377003.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  14. XM_013521547.1 → XP_013377001.1  probable tRNA methyltransferase 9-like protein isoform X1

    Conserved Domains (1) summary
    pfam08241
    Location:54 → 143
    Methyltransf_11; Methyltransferase domain

  15. XM_013521557.1 → XP_013377011.1  probable tRNA methyltransferase 9-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C2UIX5
    Conserved Domains (1) summary
    pfam08241
    Location:50 → 139
    Methyltransf_11; Methyltransferase domain

  16. XM_013521555.1 → XP_013377009.1  probable tRNA methyltransferase 9-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C2UIX5
    Conserved Domains (1) summary
    pfam08241
    Location:50 → 139
    Methyltransf_11; Methyltransferase domain

  17. XM_013521554.1 → XP_013377008.1  probable tRNA methyltransferase 9-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C2UIX5
    Conserved Domains (1) summary
    pfam08241
    Location:50 → 139
    Methyltransf_11; Methyltransferase domain

  18. XM_013521552.1 → XP_013377006.1  probable tRNA methyltransferase 9-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C2UIX5
    Conserved Domains (1) summary
    pfam08241
    Location:50 → 139
    Methyltransf_11; Methyltransferase domain

  19. XM_013521553.1 → XP_013377007.1  probable tRNA methyltransferase 9-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C2UIX5
    Conserved Domains (1) summary
    pfam08241
    Location:50 → 139
    Methyltransf_11; Methyltransferase domain

  20. XM_013521556.1 → XP_013377010.1  probable tRNA methyltransferase 9-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C2UIX5
    Related
    ENSCLAP00000000815.1, ENSCLAT00000000852.1
    Conserved Domains (1) summary
    pfam08241
    Location:50 → 139
    Methyltransf_11; Methyltransferase domain

  21. XM_013521558.1 → XP_013377012.1  probable tRNA methyltransferase 9-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C2UIX5
    Conserved Domains (1) summary
    pfam08241
    Location:50 → 139
    Methyltransf_11; Methyltransferase domain

  22. XM_013521559.1 → XP_013377013.1  probable tRNA methyltransferase 9-like protein isoform X3

Nucleotide Protein
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