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S100a11 S100 calcium binding protein A11 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102010111, updated on 10-Mar-2024

Summary

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Gene symbol
S100a11
Gene description
S100 calcium binding protein A11
See related
Ensembl:ENSCLAG00000000334
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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See S100a11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955589.1 (405544..409936)

NW_004955589.1Genomic Context describing neighboring genes Neighboring gene NEDD4 family-interacting protein 1 pseudogene Neighboring gene trichohyalin like 1 Neighboring gene uncharacterized LOC106147596 Neighboring gene S100 calcium binding protein A10 Neighboring gene histone H3-like centromeric protein CSE4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955589.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein S100-A11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955589.1 Reference ChiLan1.0 Primary Assembly

    Range
    405544..409936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005414535.1 → XP_005414592.1  protein S100-A11

    See identical proteins and their annotated locations for XP_005414592.1

    UniProtKB/TrEMBL
    A0A8C2UGZ9
    Conserved Domains (2) summary
    cd05023
    Location:4 → 92
    S-100A11; S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 ...
    pfam13499
    Location:17 → 81
    EF-hand_7; EF-hand domain pair

  2. XM_013509959.1 → XP_013365413.1  protein S100-A11

    UniProtKB/TrEMBL
    A0A8C2UGZ9
    Related
    ENSCLAP00000000397.1, ENSCLAT00000000425.1
    Conserved Domains (2) summary
    cd05023
    Location:4 → 92
    S-100A11; S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 ...
    pfam13499
    Location:17 → 81
    EF-hand_7; EF-hand domain pair

  3. XM_013509960.1 → XP_013365414.1  protein S100-A11

    UniProtKB/TrEMBL
    A0A8C2UGZ9
    Conserved Domains (2) summary
    cd05023
    Location:4 → 92
    S-100A11; S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 ...
    pfam13499
    Location:17 → 81
    EF-hand_7; EF-hand domain pair

  4. XM_005414534.2 → XP_005414591.1  protein S100-A11

    See identical proteins and their annotated locations for XP_005414591.1

    UniProtKB/TrEMBL
    A0A8C2UGZ9
    Conserved Domains (2) summary
    cd05023
    Location:4 → 92
    S-100A11; S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 ...
    pfam13499
    Location:17 → 81
    EF-hand_7; EF-hand domain pair
Nucleotide Protein
Heading Accession and Version

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