U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Smndc1 survival motor neuron domain containing 1 [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101996777, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Smndc1
Gene description
survival motor neuron domain containing 1
See related
Ensembl:ENSMOCG00000002458
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Smndc1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) 8 NC_022015.1 (80722401..80734812, complement)

Chromosome 8 - NC_022015.1Genomic Context describing neighboring genes Neighboring gene putative 60S ribosomal protein L37a Neighboring gene adducin 3 Neighboring gene MAX interactor 1, dimerization protein Neighboring gene small nucleolar RNA SNORA57 Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4-like Neighboring gene dual specificity phosphatase 5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_022015.1 Chromosome 8 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
survival of motor neuron-related-splicing factor 30

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022015.1 Reference MicOch1.0

    Range
    80722401..80734812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005352470.2 → XP_005352527.1  survival of motor neuron-related-splicing factor 30 isoform X1

    UniProtKB/TrEMBL
    A0A8J6GBW3
    Related
    ENSMOCP00000003088.1, ENSMOCT00000003299.1
    Conserved Domains (1) summary
    cd04508
    Location:76 → 124
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...

  2. XM_013348179.2 → XP_013203633.1  survival of motor neuron-related-splicing factor 30 isoform X2

    UniProtKB/TrEMBL
    A0A8J6GBW3
    Conserved Domains (1) summary
    cd04508
    Location:37 → 85
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.