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Eif2d eukaryotic translation initiation factor 2D [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101987947, updated on 8-Mar-2024

Summary

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Gene symbol
Eif2d
Gene description
eukaryotic translation initiation factor 2D
See related
Ensembl:ENSMOCG00000015872
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
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Genomic context

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See Eif2d in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
102 current MicOch1.0 (GCF_000317375.1) 6 NC_022013.1 (21658656..21698557)

Chromosome 6 - NC_022013.1Genomic Context describing neighboring genes Neighboring gene MAPK activated protein kinase 2 Neighboring gene dual specificity tyrosine phosphorylation regulated kinase 3 Neighboring gene Ras association domain family member 5 Neighboring gene inhibitor of nuclear factor kappa B kinase subunit epsilon Neighboring gene SLIT-ROBO Rho GTPase activating protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_022013.1 Chromosome 6 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formation of translation preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 2D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022013.1 Reference MicOch1.0

    Range
    21658656..21698557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026779602.1 → XP_026635403.1  eukaryotic translation initiation factor 2D isoform X2

    Conserved Domains (3) summary
    cd11608
    Location:479 → 553
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:19 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  2. XM_026779606.1 → XP_026635407.1  eukaryotic translation initiation factor 2D isoform X5

    Conserved Domains (3) summary
    cd11608
    Location:479 → 551
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:19 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  3. XM_026779605.1 → XP_026635406.1  eukaryotic translation initiation factor 2D isoform X4

    Conserved Domains (3) summary
    cd11608
    Location:429 → 504
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:19 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  4. XM_026779601.1 → XP_026635402.1  eukaryotic translation initiation factor 2D isoform X1

    Conserved Domains (3) summary
    cd11608
    Location:479 → 554
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:19 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  5. XM_026779603.1 → XP_026635404.1  eukaryotic translation initiation factor 2D isoform X3

    Conserved Domains (3) summary
    cd11608
    Location:479 → 563
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:19 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  6. XM_026779607.1 → XP_026635408.1  eukaryotic translation initiation factor 2D isoform X6

    Related
    ENSMOCP00000017217.1, ENSMOCT00000021004.1
    Conserved Domains (3) summary
    cd11608
    Location:479 → 550
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:19 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]

  7. XM_026779604.1 → XP_026635405.1  eukaryotic translation initiation factor 2D isoform X3

  8. XM_005348319.3 → XP_005348376.1  eukaryotic translation initiation factor 2D isoform X3

    Related
    ENSMOCP00000017212.1, ENSMOCT00000020999.1
    Conserved Domains (3) summary
    cd11608
    Location:479 → 563
    eIF2D_C; C-terminal domain of eIF2D and related proteins
    cd11610
    Location:6 → 81
    eIF2D_N; N-terminal domain of eIF2D and related proteins
    cl25957
    Location:19 → 178
    Tma20; Predicted ribosome-associated RNA-binding protein Tma20, contains PUA domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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