U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Sf3b5 splicing factor 3b subunit 5 [ Microtus ochrogaster (prairie vole) ]

Gene ID: 101982707, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Sf3b5
Gene description
splicing factor 3b subunit 5
See related
Ensembl:ENSMOCG00000001713
Gene type
protein coding
RefSeq status
MODEL
Organism
Microtus ochrogaster
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Microtus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Sf3b5 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
1
Annotation release Status Assembly LG Location
102 current MicOch1.0 (GCF_000317375.1) LG4 NC_022030.1 (13612750..13613414, complement)

Linkage Group LG4 - NC_022030.1Genomic Context describing neighboring genes Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene PLAG1 like zinc finger 1 Neighboring gene 40S ribosomal protein S12 pseudogene Neighboring gene syntaxin 11

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_022030.1 Chromosome LG4 Reference MicOch1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
splicing factor 3B subunit 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Microtus ochrogaster Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MicOch1.0

Genomic

  1. NC_022030.1 Reference MicOch1.0

    Range
    13612750..13613414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005361002.2 → XP_005361059.1  splicing factor 3B subunit 5

    See identical proteins and their annotated locations for XP_005361059.1

    UniProtKB/TrEMBL
    A0A8J6H2Z5
    Related
    ENSMOCP00000002177.1, ENSMOCT00000002302.1
    Conserved Domains (1) summary
    pfam07189
    Location:3 → 77
    SF3b10; Splicing factor 3B subunit 10 (SF3b10)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.