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Zmat5 zinc finger matrin-type 5 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101968170, updated on 8-Mar-2024

Summary

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Gene symbol
Zmat5
Gene description
zinc finger matrin-type 5
Locus tag
H1C71_005238
See related
EnsemblRapid:ENSSTOG00015004869
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Zmat5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (112184881..112215263)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936657.1 (3655437..3685717, complement)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene activating signal cointegrator 1 complex subunit 2 Neighboring gene cytochrome b-c1 complex subunit 9 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene calcium binding protein 7 Neighboring gene NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor Neighboring gene uncharacterized LOC120892007 Neighboring gene nipsnap homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger matrin-type protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    112184881..112215263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013363207.3 → XP_013218661.1  zinc finger matrin-type protein 5 isoform X1

    UniProtKB/TrEMBL
    I3M630
    Conserved Domains (2) summary
    cl22907
    Location:4 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_005336063.4 → XP_005336120.1  zinc finger matrin-type protein 5 isoform X1

    UniProtKB/TrEMBL
    I3M630
    Conserved Domains (2) summary
    cl22907
    Location:4 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  3. XM_040291975.1 → XP_040147909.1  zinc finger matrin-type protein 5 isoform X2

  4. XM_040291974.1 → XP_040147908.1  zinc finger matrin-type protein 5 isoform X1

    UniProtKB/TrEMBL
    I3M630
    Related
    ENSSTOP00015005884.1, ENSSTOT00015006517.1
    Conserved Domains (2) summary
    cl22907
    Location:4 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  5. XM_013363206.3 → XP_013218660.1  zinc finger matrin-type protein 5 isoform X1

    UniProtKB/TrEMBL
    I3M630
    Conserved Domains (2) summary
    cl22907
    Location:4 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  6. XM_040291976.1 → XP_040147910.1  zinc finger matrin-type protein 5 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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