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Gtpbp3 GTP binding protein 3, mitochondrial [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101967881, updated on 8-Mar-2024

Summary

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Gene symbol
Gtpbp3
Gene description
GTP binding protein 3, mitochondrial
Locus tag
H1C71_006966
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Gtpbp3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405118.1 (203978805..203982556, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936596.1 (3527903..3532931, complement)

NW_024405118.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 194 Neighboring gene plasmalemma vesicle associated protein Neighboring gene anoctamin 8 Neighboring gene DET1 and DDB1 associated 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA modification GTPase GTPBP3, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405118.1 Reference HiC_Itri_2 Primary Assembly

    Range
    203978805..203982556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005333014.4 → XP_005333071.1  tRNA modification GTPase GTPBP3, mitochondrial isoform X2

    UniProtKB/TrEMBL
    I3M7P4
    Conserved Domains (1) summary
    PRK05291
    Location:35 → 487
    trmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE

  2. XM_040290297.1 → XP_040146231.1  tRNA modification GTPase GTPBP3, mitochondrial isoform X1

    Conserved Domains (1) summary
    PRK05291
    Location:103 → 555
    trmE; tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
Nucleotide Protein
Heading Accession and Version

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