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D8Ertd738e DNA segment, Chr 8, ERATO Doi 738, expressed [ Mus musculus (house mouse) ]

Gene ID: 101966, updated on 2-Nov-2024

Summary

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Official Symbol
D8Ertd738eprovided by MGI
Official Full Name
DNA segment, Chr 8, ERATO Doi 738, expressedprovided by MGI
Primary source
MGI:MGI:1289231
See related
Ensembl:ENSMUSG00000019362 AllianceGenome:MGI:1289231
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C19orf53 (chromosome 19 open reading frame 53). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 54.2), kidney adult (RPKM 42.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See D8Ertd738e in Genome Data Viewer
Location:
8 C2; 8 40.72 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (84972862..84978340, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (84246233..84251711, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene microRNA 3074-2 Neighboring gene microRNA 24-2 Neighboring gene zinc finger SWIM-type containing 4 Neighboring gene STARR-positive B cell enhancer ABC_E59 Neighboring gene methylthioribose-1-phosphate isomerase 1 Neighboring gene YJU2 splicing factor homolog B Neighboring gene STARR-positive B cell enhancer ABC_E297 Neighboring gene THO complex 6 homolog pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Jade-1S phosphorylation induced by CK1α contributes to cell cycle progression. Borgal L, et al. Cell Cycle, 2016. PMID 26919559, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC18818

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
leydig cell tumor 10 kDa protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007571.2 → NP_001007572.1  leydig cell tumor 10 kDa protein homolog

    See identical proteins and their annotated locations for NP_001007572.1

    Status: VALIDATED

    Source sequence(s)
    CA318976, CF740495
    Consensus CDS
    CCDS40408.1
    UniProtKB/Swiss-Prot
    Q8R1F0
    Related
    ENSMUSP00000019506.8, ENSMUST00000019506.9
    Conserved Domains (1) summary
    pfam09495
    Location:1 → 69
    DUF2462; Protein of unknown function (DUF2462)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    84972862..84978340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017312495.1 → XP_017167984.1  leydig cell tumor 10 kDa protein homolog isoform X1

    UniProtKB/Swiss-Prot
    Q8R1F0
    Conserved Domains (1) summary
    pfam09495
    Location:1 → 69
    DUF2462; Protein of unknown function (DUF2462)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8R1F0.1 GenPept UniProtKB/Swiss-Prot:Q8R1F0

Gene LinkOut

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