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Per2 period circadian regulator 2 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101965344, updated on 8-Mar-2024

Summary

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Gene symbol
Per2
Gene description
period circadian regulator 2
Locus tag
H1C71_021118
See related
EnsemblRapid:ENSSTOG00015005089
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Per2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405303.1 (190676406..190718243, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936525.1 (221601..263284)

NW_024405303.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120892834 Neighboring gene hes family bHLH transcription factor 6 Neighboring gene uncharacterized LOC110598255 Neighboring gene TRAF3 interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
period circadian protein homolog 2
Names
period circadian clock 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405303.1 Reference HiC_Itri_2 Primary Assembly

    Range
    190676406..190718243 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021727032.2 → XP_021582707.2  period circadian protein homolog 2 isoform X2

    UniProtKB/TrEMBL
    I3MBV0
    Conserved Domains (2) summary
    PHA03247
    Location:816 → 1087
    PHA03247; large tegument protein UL36; Provisional
    cd00130
    Location:384 → 485
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...

  2. XM_013359167.3 → XP_013214621.1  period circadian protein homolog 2 isoform X1

    UniProtKB/TrEMBL
    I3MBV0
    Related
    ENSSTOP00015006175.1, ENSSTOT00015006837.1
    Conserved Domains (3) summary
    PHA03247
    Location:754 → 1025
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1043 → 1217
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:322 → 423
    PAS_11; PAS domain

  3. XM_040268101.1 → XP_040124035.1  period circadian protein homolog 2 isoform X3

    UniProtKB/TrEMBL
    I3MBV0
    Conserved Domains (2) summary
    PHA03247
    Location:574 → 845
    PHA03247; large tegument protein UL36; Provisional
    cd00130
    Location:142 → 243
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
Nucleotide Protein
Heading Accession and Version

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