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Rps16 ribosomal protein S16 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101958038, updated on 8-Mar-2024

Summary

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Gene symbol
Rps16
Gene description
ribosomal protein S16
Locus tag
H1C71_039077
See related
EnsemblRapid:ENSSTOG00015016510
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Rps16 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024409349.1 (13843678..13846698, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936661.1 (2271747..2274769, complement)

NW_024409349.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene pleckstrin homology and RhoGEF domain containing G2 Neighboring gene SPT5 homolog, DSIF elongation factor subunit Neighboring gene translocase of inner mitochondrial membrane 50

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024409349.1 Reference HiC_Itri_2 Primary Assembly

    Range
    13843678..13846698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005336417.4 → XP_005336474.1  40S ribosomal protein S16

    See identical proteins and their annotated locations for XP_005336474.1

    UniProtKB/TrEMBL
    A0A287DEC1, I3M8J7
    Related
    ENSSTOP00015020262.1, ENSSTOT00015022186.1
    Conserved Domains (1) summary
    PLN00210
    Location:6 → 146
    PLN00210; 40S ribosomal protein S16; Provisional
Nucleotide Protein
Heading Accession and Version

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