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SDC4 syndecan 4 [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101953327, updated on 14-Nov-2024

Summary

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Gene symbol
SDC4
Gene description
syndecan 4
See related
Ensembl:ENSCPBG00000017841
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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See SDC4 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 13 NC_088803.1 (35250636..35275235)
103 previous assembly Chrysemys_picta_BioNano-3.0.4 (GCF_000241765.4) Unplaced Scaffold NW_024885745.1 (7537548..7563110)

Chromosome 13 - NC_088803.1Genomic Context describing neighboring genes Neighboring gene neuritin-like Neighboring gene SYS1 golgi trafficking protein Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene matrilin 4 Neighboring gene WAP four-disulfide core domain protein 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088803.1 Reference ASM1138683v2

    Range
    35250636..35275235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005295304.4 → XP_005295361.1  syndecan-4 isoform X1

    UniProtKB/TrEMBL
    A0A8C3P935
    Related
    ENSCPBP00000025074.1
    Conserved Domains (1) summary
    pfam01034
    Location:148 → 205
    Syndecan; Syndecan domain

  2. XM_065565906.1 → XP_065421978.1  syndecan-4 isoform X2

    UniProtKB/TrEMBL
    A0AAJ6W8J0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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