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SMPD3 sphingomyelin phosphodiesterase 3 [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101949784, updated on 1-Aug-2024

Summary

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Gene symbol
SMPD3
Gene description
sphingomyelin phosphodiesterase 3
See related
Ensembl:ENSCPBG00000012080
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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See SMPD3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 14 NC_088804.1 (11850461..12095516, complement)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) 15 NC_024229.1 (3614980..3779546, complement)

Chromosome 14 - NC_088804.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 6 Neighboring gene solute carrier family 7 member 6 opposite strand Neighboring gene protein arginine methyltransferase 7 Neighboring gene phospholipase A2 group XV Neighboring gene epithelial splicing regulatory protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088804.1 Reference ASM1138683v2

    Range
    11850461..12095516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065567586.1 → XP_065423658.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    A0A8C3HDG3

  2. XM_065567587.1 → XP_065423659.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    A0A8C3HDG3

  3. XM_065567588.1 → XP_065423660.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    A0A8C3HDG3

  4. XM_065567589.1 → XP_065423661.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    A0A8C3HDG3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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