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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101942420, updated on 1-Aug-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
See related
Ensembl:ENSCPBG00000010429
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: 23
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 23 NC_088813.1 (2038028..2059456)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007281469.1 (2337721..2360095, complement)

Chromosome 23 - NC_088813.1Genomic Context describing neighboring genes Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene XK related 8 Neighboring gene uncharacterized LOC103306443 Neighboring gene uncharacterized LOC135977246 Neighboring gene replication protein A2 Neighboring gene thymocyte selection associated family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088813.1 Reference ASM1138683v2

    Range
    2038028..2059456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005306844.5 → XP_005306901.2  LOW QUALITY PROTEIN: acid sphingomyelinase-like phosphodiesterase 3b

    UniProtKB/TrEMBL
    A0A8C3FWQ5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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