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HEXD hexosaminidase D [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101940540, updated on 1-Aug-2024

Summary

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Gene symbol
HEXD
Gene description
hexosaminidase D
See related
Ensembl:ENSCPBG00000000413
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Also known as
HEXDC
Orthologs
human mouse all
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Genomic context

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See HEXD in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 12 NC_088802.1 (38731576..38749699, complement)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007282698.1 (19617..37333)

Chromosome 12 - NC_088802.1Genomic Context describing neighboring genes Neighboring gene cytochrome b-245 chaperone 1 Neighboring gene nuclear prelamin A recognition factor Neighboring gene mediator of RNA polymerase II transcription subunit 15-like Neighboring gene 2-oxoglutarate and iron dependent oxygenase domain containing 3 Neighboring gene urotensin-2 receptor-like Neighboring gene uncharacterized LOC112058986 Neighboring gene uncharacterized LOC122172266

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hexosaminidase D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088802.1 Reference ASM1138683v2

    Range
    38731576..38749699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065562701.1 → XP_065418773.1  hexosaminidase D

    UniProtKB/TrEMBL
    A0A8C3EYM7

  2. XM_042847411.2 → XP_042703345.1  hexosaminidase D

    UniProtKB/TrEMBL
    A0A8C3EYM7
    Conserved Domains (1) summary
    cd06565
    Location:16 → 328
    GH20_GcnA-like; Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine ...

  3. XM_005314421.5 → XP_005314478.1  hexosaminidase D

    See identical proteins and their annotated locations for XP_005314478.1

    UniProtKB/TrEMBL
    A0A8C3EYM7
    Conserved Domains (1) summary
    cd06565
    Location:16 → 328
    GH20_GcnA-like; Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine ...

  4. XM_005314420.5 → XP_005314477.1  hexosaminidase D

    See identical proteins and their annotated locations for XP_005314477.1

    UniProtKB/TrEMBL
    A0A8C3EYM7
    Related
    ENSCPBP00000000458.1
    Conserved Domains (1) summary
    cd06565
    Location:16 → 328
    GH20_GcnA-like; Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine ...
Nucleotide Protein
Heading Accession and Version

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