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FMOD fibromodulin [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101938608, updated on 1-Aug-2024

Summary

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Gene symbol
FMOD
Gene description
fibromodulin
See related
Ensembl:ENSCPBG00000017425
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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See FMOD in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 4 NC_088794.1 (21416535..21435471)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007281512.1 (769913..787053)

Chromosome 4 - NC_088794.1Genomic Context describing neighboring genes Neighboring gene opticin Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene U2 spliceosomal RNA Neighboring gene BTG anti-proliferation factor 2 Neighboring gene chitotriosidase-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fibromodulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088794.1 Reference ASM1138683v2

    Range
    21416535..21435471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042849054.2 → XP_042704988.1  fibromodulin isoform X1

    UniProtKB/TrEMBL
    A0AAJ7YBY6
    Conserved Domains (3) summary
    smart00013
    Location:79 → 112
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:155 → 338
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:110 → 133
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_005308272.4 → XP_005308329.1  fibromodulin isoform X2

    UniProtKB/TrEMBL
    A0A8C3HVU6
    Related
    ENSCPBP00000024417.1
    Conserved Domains (5) summary
    smart00013
    Location:79 → 112
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:108 → 308
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:110 → 133
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:300 → 332
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:179 → 238
    LRR_8; Leucine rich repeat
Nucleotide Protein
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