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ESR1 estrogen receptor 1 [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101933533, updated on 1-Aug-2024

Summary

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Gene symbol
ESR1
Gene description
estrogen receptor 1
See related
Ensembl:ENSCPBG00000016495
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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See ESR1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 3 NC_088793.1 (114836405..115121817)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) 3 NC_024220.1 (38354625..38700059, complement)

Chromosome 3 - NC_088793.1Genomic Context describing neighboring genes Neighboring gene required for meiotic nuclear division 1 homolog Neighboring gene acidic residue methyltransferase 1 Neighboring gene coiled-coil domain containing 170 Neighboring gene uncharacterized LOC122173511 Neighboring gene spectrin repeat containing nuclear envelope protein 1 Neighboring gene uncharacterized LOC122173512

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of estrogen receptor alpha and aromatase cDNAs and gene expression in turtles (Chrysemys picta and Pseudemys scripta) exposed to different environments. Marquez EC, et al. Comp Biochem Physiol C Toxicol Pharmacol, 2011 Sep. PMID 21664488
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables estrogen response element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to estrogen stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in estrogen receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
estrogen receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282246.1 → NP_001269175.1  estrogen receptor

    See identical proteins and their annotated locations for NP_001269175.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ195592
    UniProtKB/TrEMBL
    A0AAJ6Q963, B6E1V9
    Related
    ENSCPBP00000023095.1, ENSCPBT00000027215.1
    Conserved Domains (4) summary
    cd06949
    Location:304 → 541
    NR_LBD_ER; Ligand binding domain of Estrogen receptor, which are activated by the hormone 17beta-estradiol (estrogen)
    cd07171
    Location:174 → 255
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:42 → 175
    Oest_recep; Oestrogen receptor
    pfam12743
    Location:551 → 588
    ESR1_C; Oestrogen-type nuclear receptor final C-terminal

RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088793.1 Reference ASM1138683v2

    Range
    114836405..115121817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042846311.2 → XP_042702245.2  estrogen receptor isoform X3

  2. XM_042846300.2 → XP_042702234.2  estrogen receptor isoform X2

  3. XM_024110114.3 → XP_023965882.2  estrogen receptor isoform X3

  4. XM_008175833.4 → XP_008174055.2  estrogen receptor isoform X2

  5. XM_024110110.3 → XP_023965878.2  estrogen receptor isoform X3

  6. XM_024110102.3 → XP_023965870.2  estrogen receptor isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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