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LOC101930091 uncharacterized LOC101930091 [ Homo sapiens (human) ]

Gene ID: 101930091, updated on 22-Oct-2024

Summary

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Gene symbol
LOC101930091
Gene description
uncharacterized LOC101930091
See related
Ensembl:ENSG00000310198
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.0) See more
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Genomic context

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See LOC101930091 in Genome Data Viewer
Location:
15q22.31
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (64542101..64634712, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (62351530..62447148, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor interactor 4 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:64736443-64737642 Neighboring gene uncharacterized LOC105370861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9568 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6534 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6535 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9569 Neighboring gene zinc finger protein 609 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:64803884-64804071 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9570 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:64820886-64821752 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:64831500-64832000 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:64832001-64832501 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 61 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9571 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:64849587-64850088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:64850089-64850588 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:64855291-64855860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:64855861-64856430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9573 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9574 Neighboring gene MPRA-validated peak2369 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:64895833-64896332 Neighboring gene ribosomal protein S26 pseudogene 50 Neighboring gene NANOG hESC enhancer GRCh37_chr15:64909826-64910418 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9575 Neighboring gene ribosomal protein L21 pseudogene 15 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:64945206-64945706 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:64958513-64959212 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:64959213-64959910 Neighboring gene RNA, U6 small nuclear 549, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr15:64977741-64978242 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:64991763-64992599 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:64992600-64993437 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6536 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6537 Neighboring gene ornithine decarboxylase antizyme 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    64542101..64634712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007064678.1 RNA Sequence

  2. XR_001751587.2 RNA Sequence

  3. XR_007064677.1 RNA Sequence

  4. XR_001751585.2 RNA Sequence

    Related
    ENST00000848081.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    62351530..62447148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085620.1 RNA Sequence

  2. XR_007085621.1 RNA Sequence

  3. XR_007085619.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials