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FOXO6-AS1 FOXO6 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929901, updated on 8-Nov-2023

Summary

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Official Symbol
FOXO6-AS1provided by HGNC
Official Full Name
FOXO6 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41066
See related
Ensembl:ENSG00000229901 AllianceGenome:HGNC:41066
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p34.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (41375004..41375669, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (41244479..41245120, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (41840676..41841341, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904158 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 861 Neighboring gene uncharacterized LOC124904159 Neighboring gene Sharpr-MPRA regulatory region 968 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 863 Neighboring gene Sharpr-MPRA regulatory region 246 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 745 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 864 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:41836248-41837147 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:41837148-41838046 Neighboring gene forkhead box O6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 747 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:41852742-41853722 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:41860605-41861174 Neighboring gene Sharpr-MPRA regulatory region 9429 Neighboring gene Sharpr-MPRA regulatory region 3622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:41889556-41890113 Neighboring gene uncharacterized LOC105378678 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:41893573-41893763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 865 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:41899108-41899739 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:41899838-41900622 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:41916745-41917304 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:41928734-41929234 Neighboring gene RNA, 5S ribosomal pseudogene 45

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135817.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093151
    Related
    ENST00000429109.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    41375004..41375669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_009646194.1 Reference GRCh38.p14 PATCHES

    Range
    124733..125374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    41244479..41245120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases