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PIK3IP1-DT PIK3IP1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101929760, updated on 10-Oct-2023

Summary

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Official Symbol
PIK3IP1-DTprovided by HGNC
Official Full Name
PIK3IP1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:41072
See related
Ensembl:ENSG00000228839 AllianceGenome:HGNC:41072
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PIK3IP1-AS1
Expression
Broad expression in testis (RPKM 1.4), lymph node (RPKM 1.4) and 21 other tissues See more
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Genomic context

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Location:
22q12.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (31335349..31338021)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (31799309..31801981)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (31731335..31734007)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372997 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18855 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18856 Neighboring gene RNA, 5S ribosomal pseudogene 496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31724965-31725649 Neighboring gene POZ/BTB and AT hook containing zinc finger 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31734465-31734965 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31736003-31736977 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31738653-31739190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:31739191-31739729 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:31739730-31740267 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13627 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13628 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13629 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13630 Neighboring gene long intergenic non-protein coding RNA 1521 Neighboring gene RNA, U6 small nuclear 338, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • PIK3IP1 antisense RNA 1 (head to head)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110542.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005003
    Related
    ENST00000451161.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    31335349..31338021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    31799309..31801981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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