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LOC101929667 uncharacterized LOC101929667 [ Homo sapiens (human) ]

Gene ID: 101929667, updated on 22-Oct-2024

Summary

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Gene symbol
LOC101929667
Gene description
uncharacterized LOC101929667
See related
Ensembl:ENSG00000287255
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101929667 in Genome Data Viewer
Location:
2p22.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (40511922..40558453)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (40520830..40567451)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene zinc finger protein 19 pseudogene Neighboring gene SLC8A1 antisense RNA 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:40165083-40166282 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:40240930-40241498 Neighboring gene Sharpr-MPRA regulatory region 6978 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:40371191-40371761 Neighboring gene solute carrier family 8 member A1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:40437586-40438180 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:40469400-40469950 Neighboring gene NANOG hESC enhancer GRCh37_chr2:40545966-40546467 Neighboring gene peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like Neighboring gene Sharpr-MPRA regulatory region 14225 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:40661639-40662838 Neighboring gene uncharacterized LOC105374473 Neighboring gene uncharacterized LOC105374475

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A common variant in SLC8A1 is associated with the duration of the electrocardiographic QT interval. Kim JW, et al. Am J Hum Genet, 2012 Jul 13. PMID 22726844, Free PMC Article
  2. Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations. Sano M, et al. Hum Mol Genet, 2014 Dec 15. PMID 25055868
  3. Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians. Hong KW, et al. Hum Mol Genet, 2014 Dec 15. PMID 25035420
  4. Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. Arking DE, et al. Nat Genet, 2014 Aug. PMID 24952745, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A common variant in SLC8A1 is associated with the duration of the electrocardiographic QT interval.
EBI GWAS Catalog
Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
EBI GWAS Catalog
Genome-wide association study of electrocardiographic parameters identifies a new association for PR interval and confirms previously reported associations.
EBI GWAS Catalog
Identification of three novel genetic variations associated with electrocardiographic traits (QRS duration and PR interval) in East Asians.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    40511922..40558453
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086295.1 RNA Sequence

  2. XR_939982.3 RNA Sequence

    Related
    ENST00000688930.2

  3. XR_244991.5 RNA Sequence

  4. XR_939983.4 RNA Sequence

    Related
    ENST00000703033.1

  5. XR_427021.5 RNA Sequence

    Related
    ENST00000703001.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    40520830..40567451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071984.1 RNA Sequence

  2. XR_007071982.1 RNA Sequence

  3. XR_007071981.1 RNA Sequence

  4. XR_007071983.1 RNA Sequence

  5. XR_007071980.1 RNA Sequence

Nucleotide Protein
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