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NTM-AS1 NTM antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929637, updated on 10-Oct-2023

Summary

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Official Symbol
NTM-AS1provided by HGNC
Official Full Name
NTM antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:32293
See related
AllianceGenome:HGNC:32293
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C11orf39
Expression
Restricted expression toward brain (RPKM 3.1) See more
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Genomic context

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Location:
11q25
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (131662129..131663556, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (131698049..131699476, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (131532023..131533450, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene RNA, U6atac small nuclear 12, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131317907-131318407 Neighboring gene Sharpr-MPRA regulatory region 1894 Neighboring gene neurotrimin Neighboring gene uncharacterized LOC101929653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131454209-131455006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5759 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:131533266-131533822 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:131540246-131540746 Neighboring gene Sharpr-MPRA regulatory region 15285 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:131547556-131548159 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:131549985-131550486 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:131550487-131550986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131552307-131552807 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131551806-131552306 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4083 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:131560563-131561086 Neighboring gene GPN-loop GTPase 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131707168-131707668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131707669-131708169 Neighboring gene Sharpr-MPRA regulatory region 14910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131735724-131736230 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131737835-131738360 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131738361-131738886 Neighboring gene uncharacterized LOC107984413 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:131758747-131759640 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4084 Neighboring gene Sharpr-MPRA regulatory region 6145

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • FLJ45436, AP003039.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126159.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003039

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    131662129..131663556 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    131698049..131699476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207432.1: Suppressed sequence

    Description
    NM_207432.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZSK4.1 GenPept UniProtKB/Swiss-Prot:Q6ZSK4

Gene LinkOut

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