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LINC01422 long intergenic non-protein coding RNA 1422 [ Homo sapiens (human) ]

Gene ID: 101929539, updated on 10-Oct-2023

Summary

Official Symbol
LINC01422provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1422provided by HGNC
Primary source
HGNC:HGNC:50728
See related
AllianceGenome:HGNC:50728
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
22q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (26903292..26920611)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (27364244..27381565)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (27299255..27316574)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110091768 Neighboring gene ribosomal protein L15 pseudogene 22 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18801 Neighboring gene uncharacterized LOC107985582 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:27415462-27416661 Neighboring gene Sharpr-MPRA regulatory region 1002 Neighboring gene RNA, U6 small nuclear 1066, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110540.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z97353

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    26903292..26920611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    27364244..27381565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)