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TEX52 testis expressed 52 [ Homo sapiens (human) ]

Gene ID: 101929469, updated on 8-Mar-2024

Summary

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Official Symbol
TEX52provided by HGNC
Official Full Name
testis expressed 52provided by HGNC
Primary source
HGNC:HGNC:53643
See related
Ensembl:ENSG00000283297 AllianceGenome:HGNC:53643
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.6), skin (RPKM 1.1) and 15 other tissues See more
Orthologs
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Genomic context

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See TEX52 in Genome Data Viewer
Location:
12p13.33
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (2847723..2857039, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (2853726..2863050, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (2958212..2966205, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ITFG2 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:2903561-2904105 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4131 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4132 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:2905599-2906798 Neighboring gene FKBP prolyl isomerase 4 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:2921381-2922130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:2928702-2929202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:2929203-2929703 Neighboring gene Sharpr-MPRA regulatory region 8339 Neighboring gene integrin alpha FG-GAP repeat containing 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:2943338-2943882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:2943883-2944427 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:2944428-2944971 Neighboring gene nuclear receptor interacting protein 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:2953993-2954980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:2954981-2955966 Neighboring gene forkhead box M1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4134 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4135 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:2988229-2989182 Neighboring gene uncharacterized LOC124902860 Neighboring gene RAD9-HUS1-RAD1 interacting nuclear orphan 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

General protein information

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Preferred Names
testis-expressed protein 52

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365174.2 → NP_001352103.1  testis-expressed protein 52 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC005841
    Consensus CDS
    CCDS91638.1
    UniProtKB/Swiss-Prot
    A6NCN8
    Related
    ENSP00000489863.1, ENST00000637658.2
    Conserved Domains (1) summary
    pfam15046
    Location:25 → 303
    DUF4532; Protein of unknown function (DUF4532)

  2. NM_001365175.2 → NP_001352104.1  testis-expressed protein 52 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC005841
    Conserved Domains (1) summary
    pfam15046
    Location:25 → 208
    DUF4532; Protein of unknown function (DUF4532)

RNA

  1. NR_157835.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005841, HY051427

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    2847723..2857039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047428053.1 → XP_047284009.1  testis-expressed protein 52 isoform X1

    UniProtKB/Swiss-Prot
    A6NCN8

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    2853726..2863050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054370732.1 → XP_054226707.1  testis-expressed protein 52 isoform X1

    UniProtKB/Swiss-Prot
    A6NCN8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NCN8.2 GenPept UniProtKB/Swiss-Prot:A6NCN8

Gene LinkOut

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Molecular Biology Databases
Research Materials