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CXXC4-AS1 CXXC4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929468, updated on 10-Oct-2023

Summary

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Official Symbol
CXXC4-AS1provided by HGNC
Official Full Name
CXXC4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41054
See related
Ensembl:ENSG00000245384 AllianceGenome:HGNC:41054
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q24
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (104490965..104697592)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (107802172..108008544)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (105412122..105618749)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377350 Neighboring gene uncharacterized LOC124900744 Neighboring gene VISTA enhancer hs260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21765 Neighboring gene uncharacterized LOC124900745 Neighboring gene CXXC finger protein 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:105512595-105513176 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:105613262-105613822 Neighboring gene uncharacterized LOC124900746 Neighboring gene Sharpr-MPRA regulatory region 3032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21767 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21768 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15605 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21770 Neighboring gene ribosomal protein L6 pseudogene 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC004053.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125926.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004053, AC004063, AC093628
    Related
    ENST00000500179.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    104490965..104697592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    107802172..108008544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases