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LOC101929460 uncharacterized LOC101929460 [ Homo sapiens (human) ]

Gene ID: 101929460, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101929460
Gene description
uncharacterized LOC101929460
See related
Ensembl:ENSG00000229720
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6q27
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (169034171..169035643, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (170385402..170386874, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (169434266..169435738, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169267268-169267871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169267872-169268474 Neighboring gene uncharacterized LOC105378146 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169350566-169351070 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:169362660-169363859 Neighboring gene uncharacterized LOC105378145 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:169379249-169379891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169400447-169400946 Neighboring gene NANOG hESC enhancer GRCh37_chr6:169406890-169407416 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169418104-169418720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169418721-169419336 Neighboring gene uncharacterized LOC102724357 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:169469909-169471108 Neighboring gene uncharacterized LOC124901469

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134622.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109924
    Related
    ENST00000419800.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    169034171..169035643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    170385402..170386874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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