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LOC101929457 uncharacterized LOC101929457 [ Homo sapiens (human) ]

Gene ID: 101929457, updated on 10-Oct-2023

Summary

Gene symbol
LOC101929457
Gene description
uncharacterized LOC101929457
See related
Ensembl:ENSG00000259362
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
15q24.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (77525595..77534110)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (75386352..75394866)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (77817937..77826452)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:77574557-77575155 Neighboring gene MPRA-validated peak2392 silencer Neighboring gene non-histone chromosomal protein HMG-17 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:77708008-77708676 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6698 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9894 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9896 Neighboring gene high mobility group 20A Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77787952-77788752 Neighboring gene Sharpr-MPRA regulatory region 2172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77789555-77790354 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77799871-77800847 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77801824-77802800 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77802801-77803775 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77817641-77818484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77819329-77820172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77821015-77821858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77821859-77822700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77822701-77823544 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:77826181-77826682 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:77826683-77827182 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77833845-77834524 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:77836028-77836242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77844823-77845466 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77846672-77847265 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77847266-77847858 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77849047-77849640 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77849641-77850232 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77857721-77858585 Neighboring gene uncharacterized LOC105370906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77863406-77863906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77863907-77864407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77866115-77866615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77874268-77874768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77876983-77877794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77892119-77892619 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:77893796-77893952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77897574-77898293 Neighboring gene Sharpr-MPRA regulatory region 5143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77903637-77904464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77906671-77907170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77908397-77909223 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77913981-77914496 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77914497-77915012 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:77916045-77916560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77922113-77922678 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:77926073-77926636 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:77937918-77938418 Neighboring gene LINGO1 antisense RNA 1 Neighboring gene leucine rich repeat and Ig domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135692.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC062542, BF516416
    Related
    ENST00000561283.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    77525595..77534110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    75386352..75394866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)