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LOC101929427 uncharacterized LOC101929427 [ Homo sapiens (human) ]

Gene ID: 101929427, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101929427
Gene description
uncharacterized LOC101929427
See related
Ensembl:ENSG00000254607
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward liver (RPKM 4.3) See more
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Genomic context

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See LOC101929427 in Genome Data Viewer
Location:
11q24.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (126652778..126682104)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (126685151..126714455)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (126522673..126551999)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126225217-126225958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126225959-126226702 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126228189-126228930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126234481-126234998 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126263623-126264550 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene Sharpr-MPRA regulatory region 5906 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4052 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:126304382-126304547 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126306384-126307384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126312444-126313126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126314549-126315102 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126315103-126315656 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126316770-126317338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126336189-126336738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126336739-126337286 Neighboring gene kirre like nephrin family adhesion molecule 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126348793-126349294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126356175-126356675 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126364262-126365032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126389731-126390232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126393473-126393972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126398704-126399204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126399205-126399705 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126413360-126413866 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126413867-126414371 Neighboring gene KIRREL3 antisense RNA 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:126434244-126434929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126437665-126438165 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:126455626-126456345 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:126457067-126457785 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:126456346-126457066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126462463-126462992 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126462993-126463521 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:126471727-126472504 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:126477093-126477778 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:126477779-126478464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:126478465-126479149 Neighboring gene uncharacterized LOC124902785 Neighboring gene Sharpr-MPRA regulatory region 13423 Neighboring gene uncharacterized LOC105369561

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120532.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AP000741, AP001783
    Related
    ENST00000550747.1

  2. NR_120533.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BX093338
    Related
    ENST00000534620.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    126652778..126682104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    126685151..126714455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases