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BTBD9-AS1 BTBD9 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929425, updated on 10-Oct-2023

Summary

Official Symbol
BTBD9-AS1provided by HGNC
Official Full Name
BTBD9 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40959
See related
Ensembl:ENSG00000226533 AllianceGenome:HGNC:40959
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

Location:
6p21.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (38481596..38482527)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (38306294..38307225)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (38449372..38450303)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901525 Neighboring gene NANOG hESC enhancer GRCh37_chr6:38183178-38183679 Neighboring gene BTB domain containing 9 Neighboring gene uncharacterized LOC105375045 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:38314363-38314969 Neighboring gene VISTA enhancer hs1366 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:38400730-38401422 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:38402808-38403499 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:38403500-38404192 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:38445162-38445685 Neighboring gene MPRA-validated peak5797 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr6:38555730-38555927 Neighboring gene TFG pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17161 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:38607667-38608167 Neighboring gene uncharacterized LOC105375044

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144472.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451162, BX101050
    Related
    ENST00000412822.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    38481596..38482527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    38306294..38307225
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)