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LINC01648 long intergenic non-protein coding RNA 1648 [ Homo sapiens (human) ]

Gene ID: 101929406, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01648provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1648provided by HGNC
Primary source
HGNC:HGNC:52435
See related
Ensembl:ENSG00000233399 AllianceGenome:HGNC:52435
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p35.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (30013952..30037612, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (29857147..29880836, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (30486799..30510459, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984933 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:29779419-29779919 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:29781005-29781983 Neighboring gene MPRA-validated peak142 silencer Neighboring gene MPRA-validated peak143 silencer Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:29798359-29798929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:29814305-29814937 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:29814938-29815569 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:29826683-29827364 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:29827365-29828046 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:29828047-29828728 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:29877072-29877798 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:30042683-30043882 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:30053644-30053840 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30058109-30058609 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30064644-30065475 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30065476-30066306 Neighboring gene uncharacterized LOC107984934 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:30108561-30108764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30162197-30162696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30179358-30179858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30179859-30180359 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:30182040-30183239 Neighboring gene MPRA-validated peak146 silencer Neighboring gene MPRA-validated peak147 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30257435-30257936 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30272801-30273302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30283373-30284343 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:30296971-30297175 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30297771-30298270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30317999-30318500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30318501-30319000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30328550-30329222 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30329223-30329894 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:30331015-30331514 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:30394348-30395242 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30399701-30400346 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30403757-30404338 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30406301-30407056 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:30446776-30447975 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30454325-30454982 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:30481435-30481935 Neighboring gene Sharpr-MPRA regulatory region 9119 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30579535-30580036 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:30626667-30627480 Neighboring gene uncharacterized LOC105378617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30663183-30663713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:30667220-30667720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30702893-30703546 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6631 Neighboring gene uncharacterized LOC105378618 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:30730647-30731414

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110790.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL662906, BC042538
    Related
    ENST00000445180.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    30013952..30037612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    29857147..29880836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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