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CDC37L1-DT CDC37L1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101929351, updated on 22-Oct-2024

Summary

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Official Symbol
CDC37L1-DTprovided by HGNC
Official Full Name
CDC37L1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:49735
See related
Ensembl:ENSG00000273061 AllianceGenome:HGNC:49735
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CDC37L1-AS1
Expression
Broad expression in kidney (RPKM 2.4), liver (RPKM 1.8) and 22 other tissues See more
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Genomic context

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See CDC37L1-DT in Genome Data Viewer
Location:
9p24.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (4676600..4679480, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (4680274..4683156, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (4676600..4679480, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 6 like Neighboring gene ribosomal protein S6 pseudogene 11 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:4647337-4647509 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19743 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19744 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19745 Neighboring gene phospholipid phosphatase 6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28148 Neighboring gene cell division cycle 37 like 1, HSP90 cochaperone Neighboring gene uncharacterized LOC124902112 Neighboring gene adenylate kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CDC37L1 antisense RNA 1 (head to head)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121597.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL136231, CR737367
    Related
    ENST00000835204.1

  2. NR_121598.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL136231, CK820219

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    4676600..4679480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    4680274..4683156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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