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LOC101929278 uncharacterized LOC101929278 [ Homo sapiens (human) ]

Gene ID: 101929278, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101929278
Gene description
uncharacterized LOC101929278
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101929278 in Genome Data Viewer
Location:
3q11.2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (97301069..97415083, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (100004833..100118874, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14550 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14551 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:96606342-96607541 Neighboring gene EPH receptor A6 Neighboring gene uncharacterized LOC107986103 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:96844549-96845271 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:96995547-96996405 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:97107500-97108060 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:97108697-97109268 Neighboring gene TPTE2 pseudogene 7 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:97381594-97382192 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:97406521-97407050 Neighboring gene NANOG hESC enhancer GRCh37_chr3:97430329-97430833 Neighboring gene uncharacterized LOC124906256 Neighboring gene NANOG hESC enhancer GRCh37_chr3:97466009-97466510

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    97301069..97415083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007095968.1 RNA Sequence

  2. XR_007095967.1 RNA Sequence

  3. XR_007095966.1 RNA Sequence

  4. XR_924240.3 RNA Sequence

  5. XR_924236.3 RNA Sequence

  6. XR_924244.3 RNA Sequence

  7. XR_924242.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    100004833..100118874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073647.1 RNA Sequence

  2. XR_007073646.1 RNA Sequence

  3. XR_007073643.1 RNA Sequence

  4. XR_007073641.1 RNA Sequence

  5. XR_007073642.1 RNA Sequence

  6. XR_007073644.1 RNA Sequence

  7. XR_007073645.1 RNA Sequence

Nucleotide Protein
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