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LINC02325 long intergenic non-protein coding RNA 2325 [ Homo sapiens (human) ]

Gene ID: 101929241, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02325provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2325provided by HGNC
Primary source
HGNC:HGNC:53245
See related
Ensembl:ENSG00000246084 AllianceGenome:HGNC:53245
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
14q32.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (97458816..97581383)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (91690672..91813276)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (97925153..98047720)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370647 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:97573059-97574258 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38968 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:97646084-97647283 Neighboring gene long intergenic non-protein coding RNA 2304 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:97732279-97733478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8994 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8995 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:97832410-97832945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:97832946-97833480 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr14:97845143-97845772 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8998 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8999 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:97869232-97870431 Neighboring gene NANOG hESC enhancer GRCh37_chr14:97878244-97878765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:97906411-97906911 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9000 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38981 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:98001127-98001628 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:98008053-98009252 Neighboring gene uncharacterized LOC124903378 Neighboring gene long intergenic non-protein coding RNA 2291 Neighboring gene uncharacterized LOC124903377 Neighboring gene uncharacterized LOC105370650

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. Low SK, et al. Cancer Sci, 2013 Aug. PMID 23648065, Free PMC Article
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CTD-2506J14.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110165.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BC038465, DB124165
    Related
    ENST00000499910.3

  2. NR_110166.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and includes four alternate exons, compared to variant 1.
    Source sequence(s)
    AL355098, DB124165

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    97458816..97581383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    91690672..91813276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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