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PACRG-AS2 PACRG antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 101929239, updated on 10-Oct-2023

Summary

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Official Symbol
PACRG-AS2provided by HGNC
Official Full Name
PACRG antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:40871
See related
Ensembl:ENSG00000225437 AllianceGenome:HGNC:40871
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 5.0) See more
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Genomic context

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See PACRG-AS2 in Genome Data Viewer
Location:
6q26
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (163042980..163054161, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (164406227..164417742, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (163464012..163475193, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene parkin coregulated Neighboring gene tRNA-Glu (TTC) 15-1 Neighboring gene VISTA enhancer hs1358 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:163385553-163386752 Neighboring gene ribosomal protein L34 pseudogene 15 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:163415840-163416477 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:163504027-163504596 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:163520272-163521085 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:163602019-163602599 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:163607166-163607736 Neighboring gene PACRG antisense RNA 3 Neighboring gene uncharacterized LOC105378095

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110871.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' most structure and is shorter compared to variant 1.
    Source sequence(s)
    AK058177, AL137182
    Related
    ENST00000418665.1

  2. NR_110872.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL137182, BC033504

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    163042980..163054161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    164406227..164417742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases