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WARS2-AS1 WARS2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929147, updated on 10-Oct-2023

Summary

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Official Symbol
WARS2-AS1provided by HGNC
Official Full Name
WARS2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40612
See related
Ensembl:ENSG00000231365 AllianceGenome:HGNC:40612
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (119140396..119275973)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (119153623..119289212)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (119683019..119818596)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene tryptophanyl tRNA synthetase 2, mitochondrial Neighboring gene RBMX2 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1590 Neighboring gene RPS3A pseudogene 12 Neighboring gene uncharacterized LOC107985192 Neighboring gene ribosomal protein L6 pseudogene 2 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1591 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:119836037-119836616 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:119836617-119837196 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:119837197-119837776 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:119868596-119869458 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:119869459-119870319 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:119870320-119871181 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:119883491-119884293 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:119884294-119885095 Neighboring gene long intergenic non-protein coding RNA 1780 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1593 Neighboring gene RNA, U1 small nuclear 75, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:119900810-119902009 Neighboring gene HAO2 intronic transcript 1 Neighboring gene hydroxyacid oxidase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • FLJ43771

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125974.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BC043601, BC063600
    Related
    ENST00000440150.5

  2. NR_125975.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and contains five alternate exons, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AK125759, AL359915, BC063600
    Related
    ENST00000418015.1

  3. NR_125976.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons and contains three alternate exons, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AL359915, BC034623, BC063600
    Related
    ENST00000685192.2

  4. NR_125977.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two exons and uses an alternate splice site and contains an alternate 3' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AL590288, BC063600
    Related
    ENST00000425884.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    119140396..119275973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    119153623..119289212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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