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C12orf42-AS1 C12orf42 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929058, updated on 10-Oct-2023

Summary

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Official Symbol
C12orf42-AS1provided by HGNC
Official Full Name
C12orf42 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56185
See related
Ensembl:ENSG00000257860
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.3) See more
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Genomic context

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Location:
12q23.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (103151842..103168309)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (103112608..103129101)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (103545620..103562087)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene phenylalanine hydroxylase Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:103351919-103352450 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:103352451-103352982 Neighboring gene VISTA enhancer hs1574 Neighboring gene VISTA enhancer hs1114 Neighboring gene VISTA enhancers hs998, hs1354 and hs1540 Neighboring gene achaete-scute family bHLH transcription factor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4776 Neighboring gene chromosome 12 open reading frame 42 Neighboring gene VISTA enhancer hs967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6886 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6887 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4777 Neighboring gene U7 small nuclear RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6888 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6889 Neighboring gene VISTA enhancer hs1575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6890 Neighboring gene VISTA enhancer hs1723 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:103615579-103616560 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:103621893-103622473 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:103730647-103730806 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_23171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6891 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:103828343-103829043 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6892 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4779 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4780 Neighboring gene uncharacterized LOC105369945 Neighboring gene glutaryl-CoA dehydrogenase, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126333.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068643, AI143882, AI242068, BX117711
    Related
    ENST00000547418.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    103151842..103168309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    103112608..103129101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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